Closed diehlpk closed 1 year ago
Now, I get this error
[WARN] PLE 0610 plexec The process terminated with the signal.(rank=0)(nid=0x22570004)(sig=11)
That is the env
[u10393@i25-1200c runs_sc23]$ env
PJM_LLIO_LOCALTMP_SIZE=0
LD_LIBRARY_PATH=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/lib64:/vol0004/apps/oss/mpigcc/fjmpi-gcc11/lib:/vol0004/apps/oss/mpigcc/fjmpi-gcc11/lib64:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/lib64:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpc-1.1.0-4g4hbl27xwkpapburwgimzegm74pmdme/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn/lib:/opt/FJSVxtclanga/tcsds-1.2.37/lib64
LS_COLORS=rs=0:di=38;5;33:ln=38;5;51:mh=00:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=01;05;37;41:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;40:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.zst=38;5;9:*.tzst=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.wim=38;5;9:*.swm=38;5;9:*.dwm=38;5;9:*.esd=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.mjpg=38;5;13:*.mjpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.m4a=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.oga=38;5;45:*.opus=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
SPACK_PYTHON=/usr/bin/python3
INCLUDE=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpc-1.1.0-4g4hbl27xwkpapburwgimzegm74pmdme/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn/include
PJM_JOBNAME=STDIN
PJM_MPI_PROC=2
PJM_RSCUNIT=rscunit_ft01
MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD
LANG=C
PJM_O_MAIL=/var/spool/mail/u10393
HISTCONTROL=ignoredups
PJM_PK_retention_state_max=1
HOSTNAME=i25-1200c
PJM_ELAPSED_TIME_MODE=fixed
PJM_O_LOGNAME=u10393
C_INCLUDE_PATH=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpc-1.1.0-4g4hbl27xwkpapburwgimzegm74pmdme/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn/include
PJM_LLIO_GFSCACHE_MERGE=/vol0004:/vol0003
PATH_modshare=/usr/sbin:1:/usr/bin:1:/opt/local/mpiexec:1:/opt/FJSVxtclanga/tcsds-1.2.37/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/usr/local/bin:1
LOADEDMODULES_modshare=lang/tcsds-1.2.37:1
PJM_NORESTART=1
PJM_SUBJOBID=25596321
PJM_PK_eco_state_min=0
PJM_PK_issue_state_min=0
OMPI_CKPTCONFIG=0x00
PJM_PK_retention_state_min=0
PJM_LLIO_GFSCACHE=/vol0004
PJM_STDOUT_PATH=/vol0004/ra010008/data/u10393/OctoTigerBuildChain/STDIN.25596321.out
PJM_NODE_ALLOCATION_MODE=noncont
PJM_NODE_QUOTA_LIMIT=18446744073709551615
PJM_O_HOME=/home/u10393
S_COLORS=auto
which_declare=declare -f
PJM_LLIO_AUTO_READAHEAD=on
PJM_PK_eco_state_max=2
LD_LIBRARY_PATH_modshare=/opt/FJSVxtclanga/tcsds-1.2.37/lib64:1
CC=/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/bin/gcc
MPIF90=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/bin/mpifort
PJM_LLIO_STRIPE_COUNT=24
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
PJM_PK_throttling_state_min=0
USER=u10393
PJM_NODE=2
PJM_PK_issue_state_max=1
PJM_JOBID=25596321
FJSVXTCLANGA=/opt/FJSVxtclanga/tcsds-1.2.37
PJM_O_SHELL=/bin/bash
MPICXX=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/bin/mpicxx
PJM_DPREFIX=#PJM
PJM_STDERR_PATH=/vol0004/ra010008/data/u10393/OctoTigerBuildChain/STDIN.25596321.err
PJM_NODE_MEM_LIMIT=18446744073709551615
PWD=/vol0004/ra010008/data/u10393/runs_sc23
MODULES_LMCONFLICT_modshare=lang/tcsds-1.2.37&lang:1
HOME=/home/u10393
CMAKE_PREFIX_PATH=/vol0004/apps/oss/mpigcc/fjmpi-gcc11:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpc-1.1.0-4g4hbl27xwkpapburwgimzegm74pmdme:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn
PJM_ELAPSE_LIMIT=1500
PJM_PK_throttling_state_max=9
PLE_SCRIPT_TYPE=JOB_INTERACTIVE
OPAL_PREFIX=/vol0004/apps/oss/mpigcc/fjmpi-gcc11
PJM_LLIO_ASYNC_CLOSE=off
F77=/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/bin/gfortran
PJM_O_WORKDIR=/vol0004/ra010008/data/u10393/OctoTigerBuildChain
PJM_LLIO_CN_CACHED_WRITE_SIZE=67108864
PJM_MAILOPTION=0x0
XOS_MMM_L_PAGING_POLICY=demand:demand:prepage
_LMFILES__modshare=/work/system/modulefiles/lang/tcsds-1.2.37:1
MODULES_LMALTNAME=lang/tcsds-1.2.37&lang/default&lang
PJM_O_LANG=C
PJM_LLIO_ACTIVATE=/vol0001:/vol0002:/vol0003:/vol0004:/vol0005:/vol0006
PJM_LOCALTMP=/local
FJPNCKPT_CONFIG=0x00
PJM_RSCGRP=int
PJM_PK_issue_state=0
PJM_O_PATH=/opt/FJSVxtclanga/tcsds-1.2.37/bin:/opt/local/openssh/bin:/usr/share/Modules/bin:/opt/local/openssh/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/u10393/.local/bin:/home/u10393/bin
TMPDIR=/home/u10393
LIBRARY_PATH=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/lib64:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/lib64:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpc-1.1.0-4g4hbl27xwkpapburwgimzegm74pmdme/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn/lib
LOADEDMODULES=lang/tcsds-1.2.37
PJM_NET_ROUTE=static
FC=/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/bin/gfortran
PJM_PK_freq_min=2000
PJM_O_HOST=fn01sv06
MPICC=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/bin/mpicc
PJM_LLIO_CN_READ_CACHE=on
MODULES_LMCONFLICT=lang/tcsds-1.2.37&lang
MAIL=/var/spool/mail/u10393
CXX=/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/bin/g++
PJM_PK_eco_state=0
SPACK_ROOT=/vol0004/apps/oss/spack-v0.17.0
TERM=xterm-256color
PJM_CUSTOM_RESOURCES=estimated-power=218,exepjrsh=0,nnum_cret=0,test_rsc01=0,eco_state=0,eco_state_max=2,eco_state_min=0,ex_pipe_state=0,ex_pipe_state_max=1,ex_pipe_state_min=0,freq=2000,freq_max=2200,freq_min=2000,issue_state=0,issue_state_max=1,issue_state_min=0,jobenv=linux2,knob_io=SYSTEM,retention_state=1,retention_state_acores=0,retention_state_max=1,retention_state_min=0,throttling_state=0,throttling_state_max=9,throttling_state_min=0
PJM_SHAREDTMP=/share
PJM_PK_freq_max=2200
SPACK_LOADED_HASHES=cvur4ouyjez2esed6crxy7cwjveqgmcc:nphnrhliclp47njgp2orlwyriezsksdl:sza3atjm2pyuizapqulqortymfjsmckd:v7ajonl2u7ou5faslslrh3jm26j3ho2v:4g4hbl27xwkpapburwgimzegm74pmdme:hmyqduusgd4tpaawe2ckb7e6w62vvgbn:etgwkgytyok3774azi7ignhmspvqtcee
PJM_LLIO_SHAREDTMP_SIZE=0
MODULES_LMALTNAME_modshare=lang/tcsds-1.2.37&lang/default&lang:1
FJSVXTCMPI=/opt/FJSVxtclanga/tcsds-1.2.37
PJM_NODE_ALLOCATION_IO_MODE=no-io-exclusive
SHLVL=1
MPIF77=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/bin/mpifort
ACLOCAL_PATH=/usr/share/aclocal:/usr/share/aclocal
PJM_NODE_X=2
PJM_JOBDIR=/vol0004/ra010008/data/u10393/OctoTigerBuildChain
MANPATH=/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/share/man:/usr/share/man:/usr/share/man::
PJM_PK_ex_pipe_state=0
PJM_LLIO_SIO_READ_CACHE=on
PJM_PK_freq=2000
SPACK_LD_LIBRARY_PATH=/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/lib64:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpc-1.1.0-4g4hbl27xwkpapburwgimzegm74pmdme/lib:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn/lib:/opt/FJSVxtclanga/tcsds-1.2.37/lib64
MODULEPATH=/vol0004/apps/oss/spack-v0.17.0/share/spack/modules/linux-rhel8-a64fx:/work/system/modulefiles
PJM_NODE_CPUTIME_LIMIT=18446744073709551615
PJM_PK_ex_pipe_state_min=0
LOGNAME=u10393
PJM_ENVIRONMENT=INTERACT
CPLUS_INCLUDE_PATH=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpc-1.1.0-4g4hbl27xwkpapburwgimzegm74pmdme/include:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn/include
MODULEPATH_modshare=/work/system/modulefiles:2
PJM_PK_knob_io=SYSTEM
PJM_LLIO_PERF=off
PJM_SHELL=/bin/bash
PJM_LLIO_CN_CACHE_SIZE=134217728
PATH=/vol0004/apps/oss/mpigcc/fjmpi-gcc11/bin:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/gcc-11.2.0-nphnrhliclp47njgp2orlwyriezsksdl/bin:/vol0004/apps/oss/spack-v0.17.0/bin:/opt/local/mpiexec:/opt/FJSVxtclanga/tcsds-1.2.37/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/u10393/.local/bin:/home/u10393/bin
_LMFILES_=/work/system/modulefiles/lang/tcsds-1.2.37
PJM_LLIO_UNCOMPLETED_FILEINFO_PATH=/vol0004/ra010008/data/u10393/OctoTigerBuildChain/STDIN.25596321.err
PJM_LLIO_STRIPE_SIZE=2097152
MODULESHOME=/usr/share/Modules
PKG_CONFIG_PATH=/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/zstd-1.5.0-sza3atjm2pyuizapqulqortymfjsmckd/lib/pkgconfig:/usr/share/pkgconfig:/usr/lib64/pkgconfig:/vol0004/apps/oss/spack-v0.17.0/opt/spack/linux-rhel8-a64fx/gcc-8.4.1/mpfr-4.1.0-hmyqduusgd4tpaawe2ckb7e6w62vvgbn/lib/pkgconfig:/usr/share/pkgconfig:/usr/lib64/pkgconfig
HISTSIZE=1000
PJM_LLIO_IGNORE=/.vol0001:/.vol0002:/.vol0005:/.vol0006
PJM_PK_retention_state=1
PJM_PK_throttling_state=0
PJM_PROC_BY_NODE=1
PJM_PK_ex_pipe_state_max=1
LESSOPEN=||/usr/bin/lesspipe.sh %s
PJM_MPI_SHAPE_X=2
BASH_FUNC_which%%=() { ( alias;
eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
BASH_FUNC_module%%=() { _module_raw "$@" 2>&1
}
BASH_FUNC_spack%%=() { : this is a shell function from: /vol0004/apps/oss/spack-v0.17.0/share/spack/setup-env.sh;
: the real spack script is here: /vol0004/apps/oss/spack-v0.17.0/bin/spack;
_spack_shell_wrapper "$@";
return $?
}
BASH_FUNC__module_raw%%=() { unset _mlshdbg;
if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then
case "$-" in
*v*x*)
set +vx;
_mlshdbg='vx'
;;
*v*)
set +v;
_mlshdbg='v'
;;
*x*)
set +x;
_mlshdbg='x'
;;
*)
_mlshdbg=''
;;
esac;
fi;
unset _mlre _mlIFS;
if [ -n "${IFS+x}" ]; then
_mlIFS=$IFS;
fi;
IFS=' ';
for _mlv in ${MODULES_RUN_QUARANTINE:-};
do
if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then
if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then
_mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' ";
fi;
_mlrv="MODULES_RUNENV_${_mlv}";
_mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' ";
fi;
done;
if [ -n "${_mlre:-}" ]; then
eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash '"$@"'`;
else
eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash "$@"`;
fi;
_mlstatus=$?;
if [ -n "${_mlIFS+x}" ]; then
IFS=$_mlIFS;
else
unset IFS;
fi;
unset _mlre _mlv _mlrv _mlIFS;
if [ -n "${_mlshdbg:-}" ]; then
set -$_mlshdbg;
fi;
unset _mlshdbg;
return $_mlstatus
}
BASH_FUNC__spack_shell_wrapper%%=() { for var in LD_LIBRARY_PATH DYLD_LIBRARY_PATH DYLD_FALLBACK_LIBRARY_PATH;
do
eval "if [ -n \"\${${var}-}\" ]; then export SPACK_$var=\${${var}}; fi";
done;
if [ -n "${ZSH_VERSION:-}" ]; then
emulate -L sh;
fi;
_sp_flags="";
while [ ! -z ${1+x} ] && [ "${1#-}" != "${1}" ]; do
_sp_flags="$_sp_flags $1";
shift;
done;
if [ -n "$_sp_flags" ] && [ "${_sp_flags#*h}" != "${_sp_flags}" ] || [ "${_sp_flags#*V}" != "${_sp_flags}" ]; then
command spack $_sp_flags "$@";
return;
fi;
_sp_subcommand="";
if [ ! -z ${1+x} ]; then
_sp_subcommand="$1";
shift;
fi;
case $_sp_subcommand in
"cd")
_sp_arg="";
if [ -n "$1" ]; then
_sp_arg="$1";
shift;
fi;
if [ "$_sp_arg" = "-h" ] || [ "$_sp_arg" = "--help" ]; then
command spack cd -h;
else
LOC="$(spack location $_sp_arg "$@")";
if [ -d "$LOC" ]; then
cd "$LOC";
else
return 1;
fi;
fi;
return
;;
"env")
_sp_arg="";
if [ -n "$1" ]; then
_sp_arg="$1";
shift;
fi;
if [ "$_sp_arg" = "-h" ] || [ "$_sp_arg" = "--help" ]; then
command spack env -h;
else
case $_sp_arg in
activate)
_a=" $@";
if [ -z ${1+x} ] || [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ] || [ "${_a#* -h}" != "$_a" ] || [ "${_a#* --help}" != "$_a" ]; then
command spack env activate "$@";
else
stdout="$(command spack $_sp_flags env activate --sh "$@")" || return;
eval "$stdout";
fi
;;
deactivate)
_a=" $@";
if [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ]; then
command spack env deactivate "$@";
else
if [ -n "$*" ]; then
command spack env deactivate -h;
else
stdout="$(command spack $_sp_flags env deactivate --sh)" || return;
eval "$stdout";
fi;
fi
;;
*)
command spack env $_sp_arg "$@"
;;
esac;
fi;
return
;;
"load" | "unload")
_a=" $@";
if [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ] || [ "${_a#* -h}" != "$_a" ] || [ "${_a#* --list}" != "$_a" ] || [ "${_a#* --help}" != "$_a" ]; then
command spack $_sp_flags $_sp_subcommand "$@";
else
stdout="$(command spack $_sp_flags $_sp_subcommand --sh "$@")" || return;
eval "$stdout";
fi
;;
*)
command spack $_sp_flags $_sp_subcommand "$@"
;;
esac
}
BASH_FUNC_switchml%%=() { typeset swfound=1;
if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then
typeset swname='main';
if [ -e /usr/share/Modules/libexec/modulecmd.tcl ]; then
typeset swfound=0;
unset MODULES_USE_COMPAT_VERSION;
fi;
else
typeset swname='compatibility';
if [ -e /usr/share/Modules/libexec/modulecmd-compat ]; then
typeset swfound=0;
MODULES_USE_COMPAT_VERSION=1;
export MODULES_USE_COMPAT_VERSION;
fi;
fi;
if [ $swfound -eq 0 ]; then
echo "Switching to Modules $swname version";
source /usr/share/Modules/init/bash;
else
echo "Cannot switch to Modules $swname version, command not found";
return 1;
fi
}
BASH_FUNC_ml%%=() { module ml "$@"
}
_=/usr/bin/env
OLDPWD=/vol0004/ra010008/data/u10393
Could you also give me the environment generated by mpiexec, for both localities, please?
@hkaiser It seems running mpirun env
results in an empty result.
Even storing the result of mpirun in a variable seems to be empty
$ mpirun env
$ res=$(mpirun env)
$ echo $res
So I can run env without mpirun and will get the env of both nodes.
On differens is that PMIX_RANK
which we used before is not set in the env
, see here
env | grep PMIX_RANK
which results in not found.
But we read this environment variable here
What alternative variables can we use to detect the rank a process is running as.
Using --hpx:ignore-batch-env
seems to work. There seems to be something off with the MPI Environment on Fugaku.
Expected Behavior
HPX should use all available nodes provided by the job script.
Actual Behavior
HPX ignores the additional nodes and only runs on a single node and not using the other nodes.
This reflects in the computation time which is around the same on a single node, two nodes, and four nodes.
For distributed runs, Octo-Tiger would write as many output files as nodes. However, only one file is written for distributed runs.
Specifications
... Please describe your environment