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STOmics / SAW

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metaclass conflict when running SAW_7.1.sif #126

Closed YiqianGu closed 4 months ago

YiqianGu commented 4 months ago

Hi team,

My singularity version is 3.8.5, and I used SAW_7.1.sif. Now I am at step 041.cellCut, which is the farthest I ever got. However, I am stuck again. The error is : TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases. And I also attached the log file. Appreciate any advice.

Thanks, Yiqian

script.log

Clouate commented 4 months ago

Hi, it seems that the python environment in SAW .sif has some conflicts with your environment, you could try pip install matplotlib<3.7. By the way, if you do not need to analyze proteomic data, we recommend that you could try the reconstructed SAW v8, which will be released in a few days. SAW v8 could solve most environmental conflict problems.

YiqianGu commented 4 months ago

Thanks! Solved by "singularity exec SAW_7.1.sif pip3 install matplotlib==3.6". Looking forward to using SAW v8.