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STOmics / SAW

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Step07.report TypeError: float() argument must be a string or a number, not 'Vividict' #133

Open Changzhanhe opened 3 months ago

Changzhanhe commented 3 months ago

Hello, when I run step 07 to generate 07.report folder, it will encounter error like this: Traceback (most recent call last): File "report/handleReport_main.py", line 451, in File "report/handleReport_main.py", line 398, in main File "report/generate_analysis_report.py", line 320, in generate_html_function File "report/generate_analysis_report.py", line 1612, in get_sun_fig File "report/read_json.py", line 43, in init File "report/read_json.py", line 192, in from_alignment File "report/DataHanding.py", line 17, in tran_data TypeError: float() argument must be a string or a number, not 'Vividict'

Any idea to solve this problem? Thanks a lot!

Clouate commented 3 months ago

@Changzhanhe Hi, could you provide the 00.mapping/*Log.final.out ? The reason for this error is that the contents of the .Log.final.out file were not correctly read.

Clouate commented 3 months ago

@Changzhanhe Hi, it seems that FBS has reported your problem to us. We found that the genome mapping step of one of your lanes was interrupted. The relevant information would be fed back to you through FBS.

Changzhanhe commented 3 months ago

My problem has been solved. Thank you very much for your reply!