Is there a way to add cellbin's cell type annotation results into GEF, and plot the spatial annotation with cell shape in stereopy?

STOmics / SAW

GNU General Public License v3.0

145 stars 34 forks source link

Is there a way to add cellbin's cell type annotation results into GEF, and plot the spatial annotation with cell shape in stereopy? #146

Open ruiliphy opened 2 months ago

Clouate commented 2 months ago

Hi, perhaps you could use h5py to read cellbin.gef and then modify h5py File('cellbin.gef')['cellBin']['cell']['clusterID']. But regarding the issue of Stereopy, we suggest that you could consult with stereopy for more useful helpful information! https://github.com/STOmics/Stereopy/issues