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STOmics / SAW

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Custom genome generation #155

Closed maximelepetit closed 1 month ago

maximelepetit commented 1 month ago

Hi,

I'm working on a infected mouse lung by Influenza (H3N2). My question is do you provide tutorial regarding custom genome generation ? Bests

Maxime

Clouate commented 1 month ago

Hi, you may need to prepare the required fasta files and corresponding gtf files. For example, merge the virus sequence's fasta into the mouse's fasta, and then refer to the following tutorial to build it For SAW <v8.0: https://github.com/STOmics/SAW/tree/main/Scripts/pre_buildIndexedRef For SAW >=v8.0: https://www.stomics.tech/service/new-saw-operation-manual.html or https://en.stomics.tech/service/new-saw-operation-manual.html Tutorials->Preparation of reference

maximelepetit commented 1 month ago

It works !