Is there a way to get the labels of the cellbins and the IDs or coordinates of the DNBs that were assigned to each cellbin in a cellbin GEF file? For example, in previous example data I have looked at (in this case, a GEM_CellBin.tsv.gz file), the matrix was something like:
Where x and y are coordinates of the individual DNBs, and label is the cellbin each DNB was assigned to. Is it possible to extract something like this from the cellbin.gef file?
My goal is essentially to visualize the DNBs with respect to the different cellbins (ie, "cells") they were assigned to. Perhaps getting something like this:
Hello,
Is there a way to get the labels of the cellbins and the IDs or coordinates of the DNBs that were assigned to each cellbin in a cellbin GEF file? For example, in previous example data I have looked at (in this case, a GEM_CellBin.tsv.gz file), the matrix was something like:
Where
x
andy
are coordinates of the individual DNBs, andlabel
is the cellbin each DNB was assigned to. Is it possible to extract something like this from the cellbin.gef file?My goal is essentially to visualize the DNBs with respect to the different cellbins (ie, "cells") they were assigned to. Perhaps getting something like this:
Thanks, Brendan