Looking forward to the early implementation of batch correction algorithm between different slices.

STOmics / Stereopy

A toolkit of spatial transcriptomic analysis.

MIT License

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Looking forward to the early implementation of batch correction algorithm between different slices. #167

Closed ying1e closed 11 months ago

tanliwei-coder commented 11 months ago

Hi!! Could you provide more description about your question.

ying1e commented 11 months ago

How to eliminate non-biological batch differences between different sequencing chips due to technical problems?

tanliwei-coder commented 11 months ago

Currently, stereopy only have one algorithm to remove batches effect which is based on harmony algorithm, you can get further information about using it from here.

ying1e commented 11 months ago

Thank you!