data.plt.grn_dotplot() TypeError: unhashable type: 'DataFrame'

[Biomamba]

Dear author: I have successed performed the GRN prediction and the heatmap visualization worked. However, the function data.plt.grn_dotplot of latest version has changed. The first parameter should be a str rather than DataFrame. data.plt.grn_dotplot(data.tl.result['leiden'],network_res_key='regulatory_network_inference')

data.plt.grn_dotplot(data.tl.result['leiden'],network_res_key='regulatory_network_inference')

However, when I change it to str. I still met the following TypeError: data.plt.grn_dotplot(cluster_res_key='leiden', network_res_key='regulatory_network_inference')

Cloud you please tell me how to solved it?

[tanliwei-coder]

Sorry, the tutorial makes a little mistake, the first parameter of grn_dotplot is only needed to set to 'leiden' which specifies the clustering result.

[Biomamba]

Sorry, the tutorial makes a little mistask, the first parameter of grn_dotplot is only need to set to 'leiden' which specifies the clustering result.

Thank you for your reply, but it still doesn't work when I change data.tl.result['leiden'] into 'leiden'.

[Biomamba]

Sorry, the tutorial makes a little mistask, the first parameter of grn_dotplot is only need to set to 'leiden' which specifies the clustering result.

Thank you for your reply, but it still doesn't work when I change data.tl.result['leiden'] into 'leiden'. Following is the error:

[tanliwei-coder]

Sorry, a bug is catched by you, there is a temporary solution, you can enter into the installed directory of stereopy and find out the file where grn_dotplot is located to eliminate this bug, you can do it like below:

import os
import stereo as st
root_dir = os.path.dirname(st.__file__)
print(os.path.join(root_dir, 'algorithm/regulatory_network_inference/plot_grn.py'))

Now, you can get the path of file containing grn_dotplot, and then, open this file and locate to line 321, change the 'bin' to 'bins', i think it can work.