Closed Sophia409 closed 6 months ago
Sorry for taking so long to reply. The first question: The columns in the heat map represent genes; Second question: refer to the issue; The third question: The output is a Series that maps gene to module number. Unassigned genes are indicated with a module number of -1
Dear author:
Thank you for your contribution. @tanliwei-coder
First , how to explain the heatmap created by plt.hotspot_local_correlations? What do the columns of the heat map represent? cells or genes? Second, what are the blank rows boxed by red rectangle? Do they represent highly variable genes that are not assigned to any identified modules? Third, data.tl.result['spatial_hotspot'].modules outputs a module named module -1. What's it? I couldn't find it on heatmap.
Thanks Sophia
data.plt.hotspot_local_correlations(res_key='spatial_hotspot')