STOmics / Stereopy

A toolkit of spatial transcriptomic analysis.
MIT License
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Connectivity for spatial_neighbors on cell_bin data #245

Open garrick-chang opened 4 months ago

garrick-chang commented 4 months ago

data.tl.spatial_neighbors is suggested on the "Quick Start (Cell Bin)" to compute a spatial neighbors graph. However, how is the distance and neigobor connectivity calculated for cell bin, since it is not as apparent as square bin. And whether using spatial_neighbors on cell bin data is reliable.