STOmics / Stereopy

A toolkit of spatial transcriptomic analysis.
MIT License
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offset value tollerance #252

Open BioRB opened 3 months ago

BioRB commented 3 months ago

Dear developers, we are running Stereopy on our data.

By running st.io.read_gef_info(data_path) on the sample.label.gef generated performing lasso to extract a region form the original file.tissue.gef we get an offsetY:1. I suppose that the ideal offset should be 0. Then, Is a value of 1 tolerable? what would be the steps to perform to correct the offset?