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STOmics / Stereopy

A toolkit of spatial transcriptomic analysis.
MIT License
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Stereopy input (cellbin) #262

Closed maximelepetit closed 2 months ago

maximelepetit commented 2 months ago

Hello,

I have a question about input of stereopy. I ran successfully the stereoPipeline_v7.1 pipeline with cellbin.

Now, I want run the Quick Start (cellbin) tutorial.

Which input should I use between adjusted.cellbin.gef and cellbin.gef ?

Thanks for help!

tanliwei-coder commented 2 months ago

I guess stereoPipeline_v7.1 is a pipeline containing Cell-Correction function, adjusted.cellbin.gef is the corrected GEF, so, generally, we should use adjusted.cellbin.gef to do subsequent analysis.

maximelepetit commented 2 months ago

Thanks a lot for the reply