I notice few mistakes browsing the documentation :
First i don't find in the API , the reference of stereo.core.StPipeline.filter_marker_genes() this function is use in the code cell [35] of Cellbin quickstart notebook and code cell [37] in Squarebin quickstart tutorial.
Also in the api, in the stereo.core.StPipeline.find_marker_genes documentation function, for the corr_method parameter, as default it's set as 'benjamini-hochberg'. It is written as explication of this parameter (corr_method) : _corrmethod (str) – correlation method. . I think you want to mean pvalue correction method instead of correlation method ? And it missing the different values that this parameter can take.
Hi ,
I notice few mistakes browsing the documentation :
First i don't find in the API , the reference of stereo.core.StPipeline.filter_marker_genes() this function is use in the code cell [35] of Cellbin quickstart notebook and code cell [37] in Squarebin quickstart tutorial.
Also in the api, in the stereo.core.StPipeline.find_marker_genes documentation function, for the corr_method parameter, as default it's set as 'benjamini-hochberg'. It is written as explication of this parameter (corr_method) : _corrmethod (str) – correlation method. . I think you want to mean pvalue correction method instead of correlation method ? And it missing the different values that this parameter can take.
In the tutorial of SingleR : https://stereopy.readthedocs.io/en/latest/Tutorials/SingleR.html#Annotation-after-clutering, there's a spelling mistake regarding "Annotation-after-clutering", i think you miss the "s" of clustering :)
Thanks !