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STOmics / Stereopy

A toolkit of spatial transcriptomic analysis.
MIT License
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problem with singleR #291

Closed ultraypy closed 2 weeks ago

ultraypy commented 1 month ago

image

a problem occured when use singler to do annotation. https://stereopy.readthedocs.io/en/latest/_modules/stereo/algorithm/single_r/single_r.html

tanliwei-genomics-cn commented 4 weeks ago

Was the key ClusterHomeostasis specified by parameter ref_use_col existing in ref.cells? print the ref.cells to check it.