search

STOmics / Stereopy

A toolkit of spatial transcriptomic analysis.
MIT License
179 stars 59 forks source link

Met AttributeError when doing batchqc #300

Open Mr-grasscarp opened 1 week ago

Mr-grasscarp commented 1 week ago

Hello!I met an AttributeError when doing batchqc with stereopy v1.2.0 or v1.3.0. AttributeError: No attribute named 'StPipeline.batch_qc'

tanliwei-genomics-cn commented 1 week ago

Did you run it in a python script named as batch_qc.py? If so, change the file name to other one.

Mr-grasscarp commented 1 week ago

I ran it with jupyter notebook and the bug still persists no matter how I change the name.

tanliwei-genomics-cn commented 4 days ago

Check if the version of setuptools is higher than 69.5.1, if so, downgrade to this version.

Mr-grasscarp commented 1 day ago

the version of setuptools is 69.5.1

------------------ 原始邮件 ------------------ 发件人: @.>; 发送时间: 2024年7月1日(星期一) 下午4:00 收件人: @.>; 抄送: @.>; @.>; 主题: Re: [STOmics/Stereopy] Met AttributeError when doing batchqc (Issue #300)

Check if the version of setuptools is higher than 69.5.1, if so, downgrade to this version.

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

tanliwei-genomics-cn commented 19 hours ago

Sorry that I forgot something to tell you the torch must be installed, some others necessary dependencies mentioned in requirements_for_image.txt should be installed before BatchOC.