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SVRTK / auto-proc-svrtk

Automated processing pipeline for SVRTK dockers
GNU General Public License v3.0
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labels for 19 bounti ROIs? #3

Open jrbick opened 1 month ago

jrbick commented 1 month ago

I have successfully run this script to conduct tissue segmentation on t2w fetal MRI scans but I'm not sure how to extract ROI values for each image. Is there a label file or look up table for the .nii.gz that output from the auto-brain-bounti-segmentation-feltal.sh? The auto-brain-biometry.sh script in github seems like it may take care of this but I don't see it when I pull this docker image, which seems like the latest version. docker pull fetalsvrtk/segmentation:general_auto_amd- thanks for the advice.

alenauus commented 1 month ago

https://gin.g-node.org/kcl_cdb/fetal_brain_mri_atlas/src/master/info The label descriptions are here.