Depths in preview image on galvo rig may be out of order

SWC-Advanced-Microscopy / BakingTray

Serial-section automated anatomy extension for ScanImage

https://bakingtray.mouse.vision/

GNU Lesser General Public License v3.0

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Depths in preview image on galvo rig may be out of order #222

Closed raacampbell closed 4 years ago

raacampbell commented 5 years ago

Some evidence that optical planes (depths) 1 to 4 are mapped wrong: depth 4 is actually depth 1, depth 1 is 2, 2 is 3, etc. This is just a display bug and only happens when acquiring with galvos without an FPGA using ScanImage. To date this has only been observed once.

This issue is likely related to #20, where adjacent tiles in the preview are sometimes copies of each other. Again, this is a display bug only.

raacampbell commented 4 years ago

To me the depths looks correct. I can't see evidence of this.