Closed raacampbell closed 3 years ago
Stitchit now logs how well the autoROI worked, so we have some baseline data.
Will start by making slow changes to the settings:
settings.mainBin.expansionSize = 700
to 600
settings.clipper.edgeThreshMicrons = 250
to 350
settings.clipper.growROIbyMicrons = 500
to 450
See: e080b28b8f8cd1e698428ae5180a09d5bb168cf7
This is now all OK. Has been for some time. I don't recall how I fixed it. :-/
e.g. sample
SP_HMV_Rabies-D1-Tail-1
has a rawData footprint of 156 GB and a cropped stitched image size of 144 GB. So very little time was saved because it's obviously taking images that are too large when imaging the full brain. Things to consider:settings.mainBin.expansionSize
)? It's currently 700 microns.