[20:16:13] appending to path: /usr/bin
[20:16:13] cleaning databases in /var/lib/prokka/db
[20:16:13] cleaning complete
.[20:16:13] looking for 'makeblastdb' - found /usr/bin/makeblastdb[20:16:13] determined makeblastdb version is 002009 from 'makeblastdb: 2.9.0+'
[20:16:13] looking for 'hmmpress' - found /usr/bin/hmmpress
[20:16:13] determined hmmpress version is 003003 from '# hmmer 3.3 (nov 2019); http://hmmer.org/'[20:16:13] looking for 'cmpress' - found /usr/bin/cmpress.
[20:16:13] determined cmpress version is 001001 from '# infernal 1.1.3 (nov 2019)'
[20:16:13] pressing cm database: /var/lib/prokka/db/cm/viruses
[20:16:13] running: cmpress \/var\/lib\/prokka\/db\/cm\/viruseserror: file existence/permissions problem in trying to open cm file /var/lib/prokka/db/cm/viruses.cm file /var/lib/prokka/db/cm/viruses not found (nor an .i1m binary of it)
[20:16:13] could not run command: cmpress \/var\/lib\/prokka\/db\/cm\/viruses
I have installed the bioconda and tried to install prokka. Yet, when i tried to run the prokka, it showed some errors and asked me to setup the database first. After i have run the command prokka --setupdb, i get the output as above. What can I do to solve this problem?
[20:16:13] appending to path: /usr/bin [20:16:13] cleaning databases in /var/lib/prokka/db [20:16:13] cleaning complete .[20:16:13] looking for 'makeblastdb' - found /usr/bin/makeblastdb[20:16:13] determined makeblastdb version is 002009 from 'makeblastdb: 2.9.0+' [20:16:13] looking for 'hmmpress' - found /usr/bin/hmmpress [20:16:13] determined hmmpress version is 003003 from '# hmmer 3.3 (nov 2019); http://hmmer.org/'[20:16:13] looking for 'cmpress' - found /usr/bin/cmpress. [20:16:13] determined cmpress version is 001001 from '# infernal 1.1.3 (nov 2019)' [20:16:13] pressing cm database: /var/lib/prokka/db/cm/viruses [20:16:13] running: cmpress \/var\/lib\/prokka\/db\/cm\/viruseserror: file existence/permissions problem in trying to open cm file /var/lib/prokka/db/cm/viruses.cm file /var/lib/prokka/db/cm/viruses not found (nor an .i1m binary of it) [20:16:13] could not run command: cmpress \/var\/lib\/prokka\/db\/cm\/viruses
I have installed the bioconda and tried to install prokka. Yet, when i tried to run the prokka, it showed some errors and asked me to setup the database first. After i have run the command prokka --setupdb, i get the output as above. What can I do to solve this problem?