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SWittouck
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SCARAP
A toolkit for prokaryotic comparative genomics
GNU General Public License v3.0
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Use Seq to initialize empty sequence
#32
TheOafidian
closed
1 month ago
0
Early exit when no fastas in the input folder
#31
TheOafidian
closed
3 months ago
0
Unrecongized argumets: ./outputfolder
#30
D-Git-Bit
closed
3 months ago
5
Display offending name collisions
#29
TheOafidian
closed
6 months ago
0
Remove unused import that is throwing deprecation warnings
#28
TheOafidian
closed
7 months ago
1
Add anysymbols flag (bugfix)
#27
TheOafidian
closed
1 year ago
0
Add conda environment file and CI workflow
#26
TheOafidian
closed
12 months ago
0
Start a wiki
#25
SWittouck
opened
1 year ago
1
Allow hierarchical genome sampling
#24
SWittouck
opened
1 year ago
0
Remove redundant orthogroup gathering in hierarchical pan module
#23
SWittouck
opened
1 year ago
0
Search module: make score cutoff application more efficient
#22
SWittouck
closed
1 year ago
0
Store alignments created by build in compressed state
#21
SWittouck
opened
1 year ago
0
gene names are not unique
#20
Calvin2077
closed
1 year ago
2
Sample module gives strange AAI values
#19
SWittouck
closed
2 years ago
2
FutureWarning aggregate pandas sample module
#18
TomEile
closed
2 years ago
1
Extra feature in the log
#17
TomEile
closed
1 year ago
1
Some pandas function is deprecated
#16
SWittouck
closed
2 years ago
2
SCARAP gives an error with MMseqs2 version 13
#15
SWittouck
closed
3 years ago
0
Do more checks on the arguments
#14
SWittouck
closed
3 years ago
1
Empty core-pipeline output
#13
Rdmitche
closed
3 years ago
2
Do something sensible when fewer genomes than the number of seeds are supplied
#12
SWittouck
closed
3 years ago
1
Make the search task use 100% of the supplied threads
#11
SWittouck
closed
2 years ago
1
Check versions of dependencies
#10
SWittouck
closed
3 years ago
1
Check diamond dependency when needed
#9
SWittouck
closed
3 years ago
1
Core pipeline: write database with final selection of core orthogroups
#8
SWittouck
closed
2 years ago
1
installation issue
#7
pavlo888
closed
4 years ago
5
Rename the software
#6
SWittouck
closed
3 years ago
1
Improve hmmer score cutoff training
#5
SWittouck
opened
4 years ago
0
Orthofinder installation in conflict with python3
#4
pavlo888
closed
4 years ago
7
Redesign the command-line interface
#3
SWittouck
closed
4 years ago
0
Make all tasks assume unzipped fasta files
#2
SWittouck
closed
4 years ago
0
Check dependencies before running
#1
SWittouck
closed
4 years ago
0