search

Sabryr / Databases-on-SAGA

Setup databases centrally
MIT License
0 stars 1 forks source link

Needs more loging of connection failures for blastdb setup #6

Open Sabryr opened 2 years ago

Sabryr commented 2 years ago

[ /cluster/shared/databases/blast]$ du -hs 2021-05-27 951G 2021-05-27 [/cluster/shared/databases/blast]$ du -hs 2021-07-01 462G 2021-07-01

The 2021-07-01 version is about half the expected size. Which indicates an connection failure/time out during the download

oskarvid commented 2 years ago

I'm working on a solution now. The logging I made didn't work for some reason, so I've made a more robust solution that I'm testing now.

Sabryr commented 2 years ago

The build did not complete. Ticket RT245685 from user. I will try to see if I can log more info

Sabryr commented 2 years ago

/databases/blast]$ du -hs 2021-05-27 951G 2021-05-27

/databases/blast]$ du -hs 2021-07-29 983G 2021-07-29

databases/blast]$ du -hs 2021-07-30 175M 2021-07-30

oskarvid commented 2 years ago

I don't know who or what started the 2021-07-30 build, the cron job is not in place yet. The ticket was about the 07-27 database which I had deleted when he tried to use it, it was incomplete anyways so there was no reason to keep it. I was working on the db-update.sh script at the time and made a new database on 07-29 which resolved his issue. Since the 07-30 database is not needed I deleted it.

The cron job should get automatically created by ansible tomorrow.