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Sabryr / Databases-on-SAGA

Setup databases centrally
MIT License
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parallel error #9

Open Sabryr opened 3 years ago

Sabryr commented 3 years ago

Expected output

Running SPAdes on 13 genes time parallel --eta -j 4 spades.py --only-assembler --threads 1 --cov-cutoff 8 --12 {}/{}_interleaved.fasta -o {}/{}_spades :::: spades_genelist.txt > spades.log

Computers / CPU cores / Max jobs to run 1:local / 8 / 4

If Error: time parallel --eta -j 4 spades.py --only-assembler --threads 1 --cov-cutoff 8 --12 {}/{}_interleaved.fasta -o {}/{}_spades :::: spades_genelist.txt > spades.log parallel: Error: Command line too long (118 >= 0) at input -12: gene079

real 0m0.237s

Sabryr commented 3 years ago

Solution : Remove older $HOME/.parallel parallel --bibtex