GiulioCostantini
commented
9 years ago Hi jmbh, The correct way to specify colors for different groups is by using a vector (group_cols) with one color by group instead of one color by node. Otherwise the first 3 colors of group_cols in your example ("green" "green" "blue" ) are interpreted as the colors of the three groups.
Here is a revised example that should work:
set.seed(1) p <- 10 g <- matrix(sample(0:1, p^2, replace=T),p,p) g <- pmax(g,t(g)); diag(g) <- 0 groups <- sample(c("group1", "group2", "group3"), p, replace=T)
group_cols <- numeric(p)
group_cols[groups=="group1"] <- "blue"
group_cols[groups=="group2"] <- "green"
group_cols[groups=="group3"] <- "red"
group_cols <- c("blue", "green", "red") qgraph(g, colors=group_cols, groups=groups)
Hope this helps,
Kind regards,
Giulio
2015-09-16 19:20 GMT+02:00 jmbh notifications@github.com:
reproducible example:
set.seed(1) p <- 10 g <- matrix(sample(0:1, p^2, replace=T),p,p) g <- pmax(g,t(g)); diag(g) <- 0 groups <- sample(c("group1", "group2", "group3"), p, replace=T) group_cols <- numeric(p) group_cols[groups=="group1"] <- "blue" group_cols[groups=="group2"] <- "green" group_cols[groups=="group3"] <- "red" qgraph(g, colors=group_cols, groups=groups)
— Reply to this email directly or view it on GitHub https://github.com/SachaEpskamp/qgraph/issues/4.
Giulio Costantini, PhD Psychology Department University of Milano-Bicocca P.zza dell'Ateneo Nuovo, 1 (U6) - room 3170d 20126 Milan (MI) Phone ++39 02.6448.3867 http://apollo.psico.unimib.it/people/costantini/
jmbh
reproducible example:
set.seed(1) p <- 10 g <- matrix(sample(0:1, p^2, replace=T),p,p) g <- pmax(g,t(g)); diag(g) <- 0 groups <- sample(c("group1", "group2", "group3"), p, replace=T) group_cols <- numeric(p) group_cols[groups=="group1"] <- "blue" group_cols[groups=="group2"] <- "green" group_cols[groups=="group3"] <- "red" qgraph(g, colors=group_cols, groups=groups)