Open revelle opened 6 months ago
It seems be due to something in the way Hmisc handles data frames.
test <- describe(sat.act)
test <- describe(sat.act)
> class(test)
[1] "psych" "describe" "data.frame"
> class(test[,2:4])
[1] "describe"
> test #this works
vars n mean sd median trimmed mad min max range skew kurtosis se
gender 1 700 1.65 0.48 2 1.68 0.00 1 2 1 -0.61 -1.62 0.02
education 2 700 3.16 1.43 3 3.31 1.48 0 5 5 -0.68 -0.07 0.05
age 3 700 25.59 9.50 22 23.86 5.93 13 65 52 1.64 2.42 0.36
ACT 4 700 28.55 4.82 29 28.84 4.45 3 36 33 -0.66 0.53 0.18
SATV 5 700 612.23 112.90 620 619.45 118.61 200 800 600 -0.64 0.33 4.27
SATQ 6 687 610.22 115.64 620 617.25 118.61 200 800 600 -0.59 -0.02 4.41
> test[,2:4] #this does not
NA Variables 13 Observations
A traceback shows that the print method is dispatching print.describe (but not psych.print.describe)
traceback() 3: print.describe.single(z, ...) 2: print.describe(x) 1: (function (x, ...) UseMethod("print"))(x)
Thanks! I am looking into this and indeed seems to be due to Hmisc, but I don't really get yet why it happens as qgraphd doesn't export any function from Hmisc...
Sacha,
I think it because “tidy” is attaching it somehow.
I just figured out a work around, I will change the class of describe from "psych" "describe" “data.frame” to "psych" "P_describe" “data.frame” and adjust my print statement.
This will be an improvement in that I had problems with Hmisc::describe before.
When did you move to Singapore?
Bill
On Feb 25, 2024, at 20:16, Sacha Epskamp @.***> wrote:
Thanks! I am looking into this and indeed seems to be due to Hmisc, but I don't really get yet why it happens as qgraphd doesn't export any function from Hmisc... — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you modified the open/close state.Message ID: @.***>
William Revelle personality-project.org/revelle.html Professor personality-project.org Department of Psychology www.wcas.northwestern.edu/psych/ Northwestern University www.northwestern.edu/ Use R for psychology personality-project.org/r It 90 seconds to midnight www.thebulletin.org
Hi Bill,
Hm, qgraph doesn't import tidyr/dplyr. It imports ggplot2 but it seemed to me removing that from NAMESPACE didn't change the problem. I'll keep this issue open to look into it later as well, but if you have a workaround now that is great!
I moved to Singapore in 2022!
Best,. Sacha
Hi Sacha and Bill,
For what it's worth, Hadley says that it has to do psych
, but perhaps that's just an impression.
As I said later in that thread, to me the immediate concern is how this happened between qgraph
and psych
specifically. But then the overall concern is what pairs of R packages may be interacting with each other without any obvious messages popping up...
I'll close the other issue.
Michael
I am not sure what is happening, but there seems to be a conflict introduced into showing just part of a data.frame when using qgraph
library(psych)
but