Originally I renamed the columns in the top level module and then used the new names in other functions/modules. However, I noticed volcanoplot just passes the settings object everywhere. It feels less readable to me, but it does clear need for global vars for cmd check (and ultimately zzz.R perhaps) and the rename did feel hacky....
@elimillera Updated all the references, and went ahead and did the rest of the global vars to be consistent, so was able to get rid of zzz.R for now. Ready for review again!
Originally I renamed the columns in the top level module and then used the new names in other functions/modules. However, I noticed volcanoplot just passes the settings object everywhere. It feels less readable to me, but it does clear need for global vars for cmd check (and ultimately zzz.R perhaps) and the rename did feel hacky....
closes #96 closes #98