Sample analysis is broken

Sage-Bionetworks / CMSclassifier

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Sample analysis is broken #3

Closed mforde84 closed 7 years ago

mforde84 commented 7 years ago

sampleData <- read.table(synGet("syn4983432")@filePath, sep="\t",header = TRUE,row.names = 1,check.names=FALSE) SScms <- CMSclassifier::classifyCMS(t(sampleData),method="SSP")[[3]] Error in ncol(centroids) : object 'centroids' not found In addition: Warning message: In data(centroids) : data set ‘centroids’ not found

mforde84 commented 7 years ago

Never mind the package didn't install properly the first time. Fixed by forcing re-installation from git.