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Sage-Bionetworks / Genie

Validation and processing of GENIE files
https://genie.synapse.org/
MIT License
12 stars 9 forks source link

Fix dashboard_markdown_template #258

Closed thomasyu888 closed 4 years ago

thomasyu888 commented 4 years ago 
  cannot open file 'dashboardTemplate.Rmd': No such file or directory
Execution halted
Traceback (most recent call last):
  File "bin/database_to_staging.py", line 306, in <module>
    skip_mutationsincis=args.skipMutationsInCis)
  File "bin/database_to_staging.py", line 229, in main
    subprocess.check_call(dashboard_markdown_html_commands)
  File "/usr/lib/python3.6/subprocess.py", line 311, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['Rscript', '/home/tyu/Genie/bin/../genie/dashboard_markdown_generator.R', '8.2-consortium']' returned non-zero exit status 1.
thomasyu888 commented 4 years ago

259