Sage-Bionetworks / Genie

Validation and processing of GENIE files
https://genie.synapse.org/
MIT License
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Modify error message for maf.py check #434

Closed hhunterzinck closed 2 years ago

hhunterzinck commented 2 years ago

for _check_tsa1_tsa2 in maf.py, modify error message.

https://github.com/Sage-Bionetworks/Genie/blob/develop/genie_registry/maf.py#L25

Instead of

The values in TUMOR_SEQ_ALLELE1 must be the same as all the values in REFERENCE_ALLELE OR TUMOR_SEQ_ALLELE2

maybe

All values in TUMOR_SEQ_ALLELE1 must match all values in REFERENCE_ALLELE or all values in TUMOR_SEQ_ALLELE2