Make validation of SEQ_ASSAY_IDs case-insensitive

Sage-Bionetworks / Genie

Validation and processing of GENIE files

https://genie.synapse.org/

MIT License

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Make validation of SEQ_ASSAY_IDs case-insensitive #435

Closed hhunterzinck closed 2 years ago

hhunterzinck commented 2 years ago

The SEQ_ASSAY_IDs in the assay_information.yaml are being compared to the 'Sample Clinical Database' table (syn7517674), which converts the SEQ_ASSAY_IDs to all uppercase. If the SEQ_ASSAY_IDs assay_information.yaml contain lowercase characters, they will be erroneously flagged.

hhunterzinck commented 2 years ago

the 'Sample Clinical Database' table (syn7517674) also converts '_' to '-' so this needs to be addressed as well