Purpose: We would like to ignore case and allow underscores when cross-validating SEQ_ASSAY_IDs in clinical files against assay_information files' SEQ_ASSAY_ID values and bed file names.
This involves an addition of a new function to validate.py called standardize_string_for_validation. This function is called in all the affected clinical-assay_information and clinical-bed cross-validation functions within the clinical.py script.
Example) Something like SAGE_tEst-1 should compare as equal to something like Sage-test-1
Purpose: We would like to ignore case and allow underscores when cross-validating
SEQ_ASSAY_IDs in clinical files against assay_information files'SEQ_ASSAY_IDvalues and bed file names.This involves an addition of a new function to
validate.pycalledstandardize_string_for_validation. This function is called in all the affected clinical-assay_information and clinical-bed cross-validation functions within theclinical.pyscript.Example) Something like SAGE_tEst-1 should compare as equal to something like Sage-test-1
This also completes JIRA ticket: GEN-845