Sage-Bionetworks SynapseWorkflowHook issues

Sage-Bionetworks / SynapseWorkflowHook

Code for linking a workflow engine to a Synapse evaluation queue

Apache License 2.0

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issues

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build(deps-dev): bump junit from 4.12 to 4.13.1

#53 dependabot[bot] opened 4 years ago
0
build breaks due to maven url change

#52 brucehoff closed 4 years ago
1
Let users know there is a newer implementation

#51 kdaily closed 5 years ago
0
Invalid session token error

#50 thomasyu888 closed 5 years ago
8
Add 'accept new workflows' parameter

#49 brucehoff closed 5 years ago
1
Add COMPOSE_PROJECT_NAME to the readme, or else error...

#48 andrewelamb opened 5 years ago
4
Create stable versions of the hook.

#47 thomasyu888 closed 5 years ago
2
Issue with mutliple queues

#46 andrewelamb closed 5 years ago
9
Permission Error when running docker-compose

#45 trberg opened 5 years ago
123
Conflict with status annotation

#44 andrewelamb opened 5 years ago
4
[ERROR] Only the creator of a FileHandle can assign it to an Entity

#43 philerooski closed 5 years ago
10
Turn off participant email notifications

#42 philerooski closed 5 years ago
12
Could the workflow hook give the cwl workflow additional parameters?

#41 andrewelamb closed 5 years ago
2
Show how to run workflows having private Docker images in the Amazon cloud

#40 brucehoff opened 5 years ago
5
Reoccuring, but non-repeatable error

#39 andrewelamb opened 5 years ago
0
File names with spaces

#38 andrewelamb opened 5 years ago
0
Submission Status update fail

#37 thomasyu888 closed 5 years ago
2
Get github repo error

#36 thomasyu888 closed 5 years ago
3
Multiple copies of a submission.. Hook fails without sending email to admin

#35 thomasyu888 closed 5 years ago
2
Workflow ReadTimeout error

#34 thomasyu888 opened 5 years ago
5
Hook stuck with no error message

#33 thomasyu888 closed 5 years ago
9
Cancellation of submission error

#32 thomasyu888 closed 5 years ago
1
Add dockerquota run time tool to readme

#31 thomasyu888 opened 5 years ago
0
Rerunning submissions with TimeRemaining set to 0

#30 thomasyu888 closed 5 years ago
1
Submission Pipeline fails running through 104 submissions (10 submissions at a time)

#29 thomasyu888 closed 6 years ago
3
Only uses default MAX_CONCURRENT_WORKFLOWS, ignores set value

#28 thomasyu888 closed 6 years ago
1
EVALUATION_IN_PROGRESS vs MAX_CONCURRENT_WORKFLOWS

#27 thomasyu888 closed 6 years ago
2
Installation instructions for docker / docker-compose

#26 thomasyu888 closed 5 years ago
0
Wrong folder shared with submitters

#25 thomasyu888 closed 6 years ago
3
What is the retries setting with annotation updates?

#24 thomasyu888 closed 6 years ago
2
Wrong folder is passed from hook to workflow

#23 thomasyu888 closed 6 years ago
3
Log files don't seem to contain print statements if job is successful

#22 thomasyu888 opened 6 years ago
5
WORKFLOW_TEMPDIR is mounted incorrectly

#21 thomasyu888 closed 6 years ago
1
Adding restrictions for size of log file returned

#20 thomasyu888 opened 6 years ago
4
Add in param to limit number of submissions run at a time

#19 thomasyu888 closed 6 years ago
1
Update read me and add .envTemplate

#18 thomasyu888 closed 6 years ago
2
No TOIL_CLI_OPTIONS causes incorrect cwl-toil run command

#17 thomasyu888 closed 6 years ago
5
Do not allow for all registered users to submit to evaluation queue

#16 thomasyu888 closed 6 years ago
3
Add pip install docker to Docker.toil

#15 thomasyu888 closed 6 years ago
3
No corresponding open Synapse submission error while running multiple submissions

#14 thomasyu888 closed 6 years ago
1
pip install Docker

#13 thomasyu888 closed 6 years ago
1
Error when running multiple prediction file submissions

#12 thomasyu888 closed 6 years ago
6
Configure/control the communication of results and errors to the submitter

#11 thomasyu888 closed 6 years ago
9
Invalid submission runs through scoring harness workflow, but error

#10 thomasyu888 closed 6 years ago
8
Docker daemon not found on docker run

#9 thomasyu888 closed 6 years ago
3
Says username / password incorrect, but its not

#8 thomasyu888 closed 6 years ago
4
Running docker workflow

#7 thomasyu888 closed 6 years ago
3
Updating submission status breaks the hook

#6 thomasyu888 closed 6 years ago
2
Had to generate my own docker cert

#5 thomasyu888 closed 6 years ago
3
Confusing submission instructions for evaluation queue

#4 thomasyu888 closed 6 years ago
1