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Sage-Bionetworks / dccmonitor

Allows for monitoring of data uploaded via the dccvalidator application. Functions for getting information on the uploaded files, metadata validation status, and more.
https://sage-bionetworks.github.io/dccmonitor
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Remove code that results in missing files in annotations module #86

Closed Aryllen closed 4 years ago

Aryllen commented 4 years ago

Originally, I thought we didn't need the metadata files in the list and added this code to remove them. https://github.com/Sage-Bionetworks/dccmonitor/blob/ecd9bf955abb663d9aaf49cf90d22f03fd4c18dc/R/combine-all-metadata.R#L28-L34

This was not good in two ways.

  1. Metadata files also need annotations
  2. This logic also removes processed data and any multispecimen files.

Remove this chunk of code.