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Sage-Bionetworks / metanetworkSynapse

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computing rank consensus fails #35

Closed blogsdon closed 7 years ago

blogsdon commented 7 years ago

the job gets killed. memory shortage? error: /var/spool/sge/ip-10-0-0-69/job_scripts/77: line 2: 7954 Killed
Rscript $pathv/buildConsensus.R $dataFile $outputpath $networkFolderId

blogsdon commented 7 years ago

was a memory issue, spun up a new cfncluster with r3.4xlarge compute instances, and it looks like this problem is solved.