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Sage-Bionetworks / metanetworkSynapse

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rank consensus fails due to illegal operand error #42

Open blogsdon opened 7 years ago

blogsdon commented 7 years ago

suspicion that it is an issue with blas

blogsdon commented 7 years ago

caught illegal operation address 0x2b4aefcfb8ea, cause 'illegal operand'

Traceback: 1: eval(expr, envir, enclos) 2: eval(lhs, parent, parent) 3: t(X) %*% X %>% solve() 4: FUN(newX[, i], ...) 5: apply(X, 2, fastlmbic, correction = ncol(X)) 6: metanetwork::covarianceSelectionMBPath(data.matrix(exprData), rankedEdges = edgeList[, 1:2], start = 1) 7: metanetwork::computeBICcurve(networks$rankConsensus, dataSet, maxEdges = 1e+05) 8: buildConsensus(outputpath, networkFolderId, fileName)

blogsdon commented 7 years ago

appears to happen when I call the solve command

blogsdon commented 7 years ago

issue with openblas on r3.x instances. rewriting the packer script to fix this problem