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Sage-Bionetworks / neurolincsdreamchallenge

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Tracks that are missing a TimePoint = 0 row #19

Closed philerooski closed 4 years ago

philerooski commented 4 years ago

These two tracks have slightly different issues. The LINCS062016B track has NA values for both Live_Cells and Lost_Tracking for its first TimePoint (LINCS062016B starts at TimePoint 1 in the source file). The AB-SOD1-KW4-WTC11-Survival only has a row for TimePoint = 3, no other TimePoints are present.

# A tibble: 4 x 7
  Experiment                 Well  ObjectTrackID ObjectLabelsFound TimePoint Live_Cells Lost_Tracking
  <chr>                      <chr>         <int>             <int>     <int> <lgl>      <lgl>        
1 LINCS062016B               A6               12                12         1 NA         NA           
2 LINCS062016B               A6               12                12         2 TRUE       FALSE        
3 LINCS062016B               A6               12                11         3 TRUE       TRUE         
4 AB-SOD1-KW4-WTC11-Survival B1                6                 6         3 NA         NA

We can drop these tracks or if we would like to provide the missing rows I can include these tracks in the final dataset.

jlinsley1983 commented 4 years ago

Hi Phil,

Delete the #4 track form the data set (AB-SOD1-KW4-WTC11-Survival, B1, #6).

For LINCS062016B the NA’s in timepoint 1 are an error. Both Live_Cells and Lost_tracking need to be TRUE, not NA.

Best, Jeremy

On Feb 5, 2020, at 12:08 PM, Phil Snyder notifications@github.com wrote:

These two tracks have slightly different issues. The LINCS062016B track has NA values for both Live_Cells and Lost_Tracking for its first TimePoint (LINCS062016B starts at TimePoint 1 in the source file). The AB-SOD1-KW4-WTC11-Survival only has a row for TimePoint = 3, no other TimePoints are present.

A tibble: 4 x 7

Experiment Well ObjectTrackID ObjectLabelsFound TimePoint Live_Cells Lost_Tracking

1 LINCS062016B A6 12 12 1 NA NA 2 LINCS062016B A6 12 12 2 TRUE FALSE 3 LINCS062016B A6 12 11 3 TRUE TRUE 4 AB-SOD1-KW4-WTC11-Survival B1 6 6 3 NA NA We can drop these tracks or if we would like to provide the missing rows I can include these tracks in the final dataset. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub , or unsubscribe .
philerooski commented 4 years ago

Corrected rows here: https://www.synapse.org/#!Synapse:syn21574264