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Sage-Bionetworks / neurolincsdreamchallenge

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Zombie cells #8

Closed philerooski closed 4 years ago

philerooski commented 5 years ago

These cells die then come back to life at a later timepoint.

  Experiment               ObjectTrackID Well 
  <chr>                            <int> <chr>
1 KS-AB-iMN-TDP43-Survival            45 C5   
2 KS-AB-iMN-TDP43-Survival            10 F5   
3 LINCS062016A                        33 D4   
4 LINCS062016B                        52 A3   
5 LINCS062016B                        31 B8

For example:

                 Experiment Well ObjectTrackID TimePoint Live_Cells Lost_Tracking
1  KS-AB-iMN-TDP43-Survival   C5            45         0      FALSE         FALSE
2  KS-AB-iMN-TDP43-Survival   C5            45         1         NA            NA
3  KS-AB-iMN-TDP43-Survival   C5            45         2         NA            NA
4  KS-AB-iMN-TDP43-Survival   C5            45         3         NA            NA
5  KS-AB-iMN-TDP43-Survival   C5            45         4         NA            NA
6  KS-AB-iMN-TDP43-Survival   C5            45         5         NA            NA
7  KS-AB-iMN-TDP43-Survival   C5            45         6       TRUE         FALSE
jaslinkalra commented 5 years ago

These cells have been corrected for curation here- https://www.synapse.org/#!Synapse:syn18160422 Found few other objects that were curated incorrectly due to the curation errors that occurred for the identified objects. Basically, an ObjectLabelsFound was confused for a different number for example, 45 in C5 well above was halfway curated for ObjectLabelsFound 46.

kdaily commented 4 years ago

@phil did other things addressed (or our decision to replace entire tracks instead of specific rows) fix this issue?

philerooski commented 4 years ago

Yes. There are no more zombie tracks because that would violate the rule

If Live_Cells is FALSE, all subsequent Live_Cells values must be FALSE.