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Sage-Bionetworks / rare-disease-workflows

Workflows for processing rare disease data on Synapse.
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Update drug-screening workflow to dump data in synapse table #2

Open sgosline opened 4 years ago

sgosline commented 4 years ago

To avoid continually updating a file and also provide a more queryable interface for future workflows we should update the drug-screening workflow to append to a table instead of adding to a file. Table should be on http://synapse.org/kairos for now.

sgosline commented 4 years ago

FYI it will require some hacks to get it to work: https://github.com/Sage-Bionetworks/rare-disease-workflows/blob/master/rna-seq-workflow/steps/merge-files-to-syn-table.R