Open afwillia opened 2 years ago
For me, I also get the following error whenever I use the -js
or --json_schema
flag:
Traceback (most recent call last):
File "/Users/vchung/Desktop/data_curator/.venv/bin/schematic", line 8, in <module>
sys.exit(main())
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/click/decorators.py", line 33, in new_func
return f(get_current_context().obj, *args, **kwargs)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/schematic/models/commands.py", line 224, in validate_manifest
errors, warnings = metadata_model.validateModelManifest(
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/schematic/models/metadata.py", line 254, in validateModelManifest
errors, warnings, manifest = validate_all(self, errors, warnings, manifest, manifestPath, self.sg, jsonSchema, restrict_rules, project_scope)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/schematic/models/validate_manifest.py", line 273, in validate_all
vmv_errors, vmv_warnings = vm.validate_manifest_values(manifest, jsonSchema)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/schematic/models/validate_manifest.py", line 244, in validate_manifest_values
v = Draft7Validator(jsonSchema)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/jsonschema/validators.py", line 285, in __init__
resolver = RefResolver.from_schema(schema, id_of=id_of)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/jsonschema/validators.py", line 682, in from_schema
return cls(base_uri=id_of(schema), referrer=schema, *args, **kwargs)
File "/Users/vchung/Desktop/data_curator/.venv/lib/python3.8/site-packages/jsonschema/validators.py", line 156, in _id_of
return schema.get(u"$id", u"")
AttributeError: 'str' object has no attribute 'get'
I'm on Python 3.8.1 and schematicpy 22.8.1.
Describe the bug schematic model validate ignores the jsonld file provided by the -js flag. Instead, it always uses the model specified in the config file.
To Reproduce Steps to reproduce the behavior:
schematic model --config ../config.yml validate -mp ../patient_manifest.csv -dt Patient -js example.model.2.jsonld
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