Create tool/workflow annotations

Sage-Bionetworks / synapseAnnotations

Sage Bionetworks derived standards for annotating content in Synapse.

MIT License

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Create tool/workflow annotations #83

Closed jaeddy closed 6 years ago

jaeddy commented 7 years ago

This will encompass keys/terms to describe tools used in and shared by a project such that they can be easily viewed and queried similar to other files.

Some potential information to consider:

tool name
tool version
tags
tool type
language / platform
source
application(s)
container available?
in tool registry?

And probably others we'll think of as we go.

Worth paying attention to related efforts by GA4GH, Dockstore, Biocontainers, et al.

sgosline commented 7 years ago

"workflows" I'd like to support include:

basic scripts uploaded to synapse
R/python package links
dockerized images
gitHub repos

sgosline commented 7 years ago

We'll take a first pass at a schema to support this. First pass will be to store everything as a file entity with a link to the relevant tool.

jaeddy commented 7 years ago

Getting started here: https://github.com/Sage-Bionetworks/synapseAnnotations/blob/add-tool-annotations/synapseAnnotations/data/tool_annotations.json

Feedback welcome.

sgosline commented 6 years ago

@jaeddy should we close this for now?