Closed akaat closed 1 week ago
@akaat Thanks for reaching out. Could you please try to install synapser with python 3.11? Currently, python 3.12 is not supported yet.
Thanks @danlu1 - I installed 3.11 and things didn't change, so I uninstalled 3.12 and manually added 3.11 to my path. Now I have a lot less information printed to the console, but I get two different error messages, one at the beginning:
Warning in install.packages : unable to access index for repository http://ran.synapse.org/bin/windows/contrib/4.4: cannot open URL 'http://ran.synapse.org/bin/windows/contrib/4.4/PACKAGES'
And this one at the end:
NOTE: Python version was forced by Windows Registry Using virtual environment "~/.virtualenvs/r-reticulate" ... Error: invalid version specification ''
Any other ideas?
@akaat Sorry I should have noticed but our suspicion is that the error might be related to the R version. Currently, R version 4.4.1 is not supported yet. I will test on my end and get back to yo ASAP.
Ahh, that's an easy enough fix. I reverted my R version back to 4.3.3 for this session and it installed no problem. Thanks
Glad it works @akaat
The new synapser version is now out and it does support R 4.4.1. Just wanted to let you know @akaat , but going to close this request. Thanks for filing this ticket!
Operating system
Windows 10 Enterprise
Description of the problem
I am unable to install synapser. I have python 3.12 already installed and the required python libraries in the terminal, but when calling
install.packages("synapser", repos=c("http://ran.synapse.org", "http://cran.fhcrc.org"))
it tries to install everything all over again and then errors out because some of the libraries (which are already installed) do not register.Expected behavior
I expected a successful install.
Actual behavior
A lot of installation information is printed to the console, but the ending is probably most relevant. This is what I see:
Please note that all of the packages listed in the "Error" section are installed in python, and even though it says a new release of pip is available, I am running that release. So it appears that it is failing to find my python installation and working to do it on its own.
Output of
sessionInfo()
R version 4.4.1 (2024-06-14 ucrt) Platform: x86_64-w64-mingw32/x64 Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
time zone: America/Chicago tzcode source: internal
attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] compiler_4.4.1 tools_4.4.1