add plots to sci-viz on foraging bouts

SainsburyWellcomeCentre / aeon_analysis

Data Analysis code for Project Aeon

BSD 3-Clause "New" or "Revised" License

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add plots to sci-viz on foraging bouts #1

Open jkbhagatio opened 1 year ago

jkbhagatio commented 1 year ago

For example, given some time thresholds, how many bouts occurred per day and how many pellets per each bout, segregated by animal and patch.

I can write up some functions that do this - leaving this issue as a placeholder for now.

JaerongA commented 1 year ago

Hi, @jkbhagatio . I believe some of these are implemented here:

number of foraging bouts - (https://github.com/SainsburyWellcomeCentre/aeon_mecha/blob/05240430f82bf2a7e1e9cb0dd421bc9f55ecf46d/aeon/dj_pipeline/utils/plotting.py#L345)
number of food pellets - (https://github.com/SainsburyWellcomeCentre/aeon_mecha/blob/05240430f82bf2a7e1e9cb0dd421bc9f55ecf46d/aeon/dj_pipeline/analysis/visit_analysis.py#L487).

Do you have something else in mind? You're welcome to modify/update this code.

jkbhagatio commented 1 year ago

ah nice, cool. So I guess we'd still need to add some code to get like distribution of food pellets in bout? Ostensibly all we'd need is an easy way to get all bout start and end times, and find number of pellets delivered within these times.