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SainsburyWellcomeCentre / aeon_mecha

Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
BSD 3-Clause "New" or "Revised" License
3 stars 5 forks source link

No SLEAP data found in some chunks #354

Open ttngu207 opened 3 months ago

ttngu207 commented 3 months ago

There are 131 chunks without SLEAP data - I'm not sure if there's a bug in the loader or those chunks actually do not have SLEAP data

The code to do the loading is below

data_dirs = [PosixPath('/ceph/aeon/aeon/data/raw/AEON3/social0.1')]

pose_data = api.load(
    root=data_dirs,
    reader=social01.CameraTop.Pose,
    start=pd.Timestamp(chunk_start),
    end=pd.Timestamp(chunk_end),
)

empty_pose_df.csv

jkbhagatio commented 3 months ago

Do you have example start and end timestamps for these? All social0.1 and social0.2 data should have position tracking as CameraTop_test-node1*

ttngu207 commented 3 months ago

"",experiment_name,chunk_start,device_serial_number,chunk_end,spinnaker_video_source_name 0,social0.1-aeon3,2023-11-22 11:00:00,23032909,2023-11-22 12:00:00,CameraTop 1,social0.1-aeon3,2023-11-22 12:00:00,23032909,2023-11-22 13:00:00,CameraTop 2,social0.1-aeon3,2023-11-22 13:00:00,23032909,2023-11-22 14:00:00,CameraTop 3,social0.1-aeon3,2023-11-22 14:00:00,23032909,2023-11-22 15:00:00,CameraTop 4,social0.1-aeon3,2023-11-22 15:00:00,23032909,2023-11-22 16:00:00,CameraTop 5,social0.1-aeon3,2023-11-22 16:00:00,23032909,2023-11-22 17:00:00,CameraTop 6,social0.1-aeon3,2023-11-22 17:00:00,23032909,2023-11-22 18:00:00,CameraTop 7,social0.1-aeon3,2023-11-22 18:00:00,23032909,2023-11-22 19:00:00,CameraTop 8,social0.1-aeon3,2023-11-22 19:00:00,23032909,2023-11-22 20:00:00,CameraTop 9,social0.1-aeon3,2023-11-22 20:00:00,23032909,2023-11-22 21:00:00,CameraTop 10,social0.1-aeon3,2023-11-22 21:00:00,23032909,2023-11-22 22:00:00,CameraTop 11,social0.1-aeon3,2023-11-22 22:00:00,23032909,2023-11-22 23:00:00,CameraTop 12,social0.1-aeon3,2023-11-22 23:00:00,23032909,2023-11-23 00:00:00,CameraTop 13,social0.1-aeon3,2023-11-23 00:00:00,23032909,2023-11-23 01:00:00,CameraTop 14,social0.1-aeon3,2023-11-23 01:00:00,23032909,2023-11-23 02:00:00,CameraTop 15,social0.1-aeon3,2023-11-23 02:00:00,23032909,2023-11-23 03:00:00,CameraTop 16,social0.1-aeon3,2023-11-23 03:00:00,23032909,2023-11-23 04:00:00,CameraTop 17,social0.1-aeon3,2023-11-23 04:00:00,23032909,2023-11-23 05:00:00,CameraTop 18,social0.1-aeon3,2023-11-23 05:00:00,23032909,2023-11-23 06:00:00,CameraTop 19,social0.1-aeon3,2023-11-23 06:00:00,23032909,2023-11-23 07:00:00,CameraTop 20,social0.1-aeon3,2023-11-23 07:00:00,23032909,2023-11-23 08:00:00,CameraTop 21,social0.1-aeon3,2023-11-23 08:00:00,23032909,2023-11-23 09:00:00,CameraTop 22,social0.1-aeon3,2023-11-23 09:00:00,23032909,2023-11-23 10:00:00,CameraTop 23,social0.1-aeon3,2023-11-23 10:00:00,23032909,2023-11-23 11:00:00,CameraTop 24,social0.1-aeon3,2023-11-23 11:00:00,23032909,2023-11-23 12:00:00,CameraTop 25,social0.1-aeon3,2023-11-23 12:00:00,23032909,2023-11-23 13:00:00,CameraTop 26,social0.1-aeon3,2023-11-23 13:00:00,23032909,2023-11-23 14:00:00,CameraTop 27,social0.1-aeon3,2023-11-23 14:00:00,23032909,2023-11-23 15:00:00,CameraTop 28,social0.1-aeon3,2023-11-23 15:00:00,23032909,2023-11-23 16:00:00,CameraTop 29,social0.1-aeon3,2023-11-23 16:00:00,23032909,2023-11-23 16:55:23,CameraTop 30,social0.1-aeon3,2023-11-23 16:55:23,23032909,2023-11-23 17:00:00,CameraTop 31,social0.1-aeon3,2023-11-23 17:00:00,23032909,2023-11-23 18:00:00,CameraTop 32,social0.1-aeon3,2023-11-23 18:00:00,23032909,2023-11-23 19:00:00,CameraTop 33,social0.1-aeon3,2023-11-23 19:00:00,23032909,2023-11-23 20:00:00,CameraTop 34,social0.1-aeon3,2023-11-23 20:00:00,23032909,2023-11-23 21:00:00,CameraTop 35,social0.1-aeon3,2023-11-23 21:00:00,23032909,2023-11-23 22:00:00,CameraTop 36,social0.1-aeon3,2023-11-23 22:00:00,23032909,2023-11-23 23:00:00,CameraTop 37,social0.1-aeon3,2023-11-23 23:00:00,23032909,2023-11-24 00:00:00,CameraTop 38,social0.1-aeon3,2023-11-24 00:00:00,23032909,2023-11-24 01:00:00,CameraTop 39,social0.1-aeon3,2023-11-24 01:00:00,23032909,2023-11-24 02:00:00,CameraTop 40,social0.1-aeon3,2023-11-24 02:00:00,23032909,2023-11-24 03:00:00,CameraTop 41,social0.1-aeon3,2023-11-24 03:00:00,23032909,2023-11-24 04:00:00,CameraTop 42,social0.1-aeon3,2023-11-24 04:00:00,23032909,2023-11-24 05:00:00,CameraTop 43,social0.1-aeon3,2023-11-24 05:00:00,23032909,2023-11-24 06:00:00,CameraTop 44,social0.1-aeon3,2023-11-24 06:00:00,23032909,2023-11-24 07:00:00,CameraTop 45,social0.1-aeon3,2023-11-24 07:00:00,23032909,2023-11-24 08:00:00,CameraTop 46,social0.1-aeon3,2023-11-24 08:00:00,23032909,2023-11-24 09:00:00,CameraTop 47,social0.1-aeon3,2023-11-24 09:00:00,23032909,2023-11-24 10:00:00,CameraTop 48,social0.1-aeon3,2023-11-24 10:00:00,23032909,2023-11-24 11:00:00,CameraTop 49,social0.1-aeon3,2023-11-24 11:00:00,23032909,2023-11-24 12:00:00,CameraTop 50,social0.1-aeon3,2023-11-24 12:00:00,23032909,2023-11-24 13:00:00,CameraTop 51,social0.1-aeon3,2023-11-24 13:00:00,23032909,2023-11-24 13:25:03,CameraTop 52,social0.1-aeon3,2023-11-24 13:25:03,23032909,2023-11-24 14:00:00,CameraTop 53,social0.1-aeon3,2023-11-24 14:00:00,23032909,2023-11-24 15:00:00,CameraTop 54,social0.1-aeon3,2023-11-24 15:00:00,23032909,2023-11-24 16:00:00,CameraTop 55,social0.1-aeon3,2023-11-24 16:00:00,23032909,2023-11-24 17:00:00,CameraTop 56,social0.1-aeon3,2023-11-24 17:00:00,23032909,2023-11-24 18:00:00,CameraTop 57,social0.1-aeon3,2023-11-24 18:00:00,23032909,2023-11-24 19:00:00,CameraTop 58,social0.1-aeon3,2023-11-24 19:00:00,23032909,2023-11-24 20:00:00,CameraTop 59,social0.1-aeon3,2023-11-24 20:00:00,23032909,2023-11-24 21:00:00,CameraTop 60,social0.1-aeon3,2023-11-24 21:00:00,23032909,2023-11-24 22:00:00,CameraTop 61,social0.1-aeon3,2023-11-24 22:00:00,23032909,2023-11-24 23:00:00,CameraTop 62,social0.1-aeon3,2023-11-24 23:00:00,23032909,2023-11-25 00:00:00,CameraTop 63,social0.1-aeon3,2023-11-25 00:00:00,23032909,2023-11-25 01:00:00,CameraTop 64,social0.1-aeon3,2023-11-25 01:00:00,23032909,2023-11-25 02:00:00,CameraTop 65,social0.1-aeon3,2023-11-25 02:00:00,23032909,2023-11-25 03:00:00,CameraTop 66,social0.1-aeon3,2023-11-25 03:00:00,23032909,2023-11-25 04:00:00,CameraTop 67,social0.1-aeon3,2023-11-25 04:00:00,23032909,2023-11-25 05:00:00,CameraTop 68,social0.1-aeon3,2023-11-25 05:00:00,23032909,2023-11-25 06:00:00,CameraTop 69,social0.1-aeon3,2023-11-25 06:00:00,23032909,2023-11-25 07:00:00,CameraTop 70,social0.1-aeon3,2023-11-25 07:00:00,23032909,2023-11-25 08:00:00,CameraTop 71,social0.1-aeon3,2023-11-25 08:00:00,23032909,2023-11-25 09:00:00,CameraTop 72,social0.1-aeon3,2023-11-25 09:00:00,23032909,2023-11-25 10:00:00,CameraTop 73,social0.1-aeon3,2023-11-25 10:00:00,23032909,2023-11-25 11:00:00,CameraTop 74,social0.1-aeon3,2023-11-25 11:00:00,23032909,2023-11-25 12:00:00,CameraTop 75,social0.1-aeon3,2023-11-25 12:00:00,23032909,2023-11-25 13:00:00,CameraTop 76,social0.1-aeon3,2023-11-25 13:00:00,23032909,2023-11-25 14:00:00,CameraTop 77,social0.1-aeon3,2023-11-25 14:00:00,23032909,2023-11-25 15:00:00,CameraTop 78,social0.1-aeon3,2023-11-25 15:00:00,23032909,2023-11-25 16:00:00,CameraTop 79,social0.1-aeon3,2023-11-25 16:00:00,23032909,2023-11-25 17:00:00,CameraTop 80,social0.1-aeon3,2023-11-25 17:00:00,23032909,2023-11-25 18:00:00,CameraTop 81,social0.1-aeon3,2023-11-25 18:00:00,23032909,2023-11-25 19:00:00,CameraTop 82,social0.1-aeon3,2023-11-25 19:00:00,23032909,2023-11-25 20:00:00,CameraTop 83,social0.1-aeon3,2023-11-25 20:00:00,23032909,2023-11-25 21:00:00,CameraTop 84,social0.1-aeon3,2023-11-25 21:00:00,23032909,2023-11-25 22:00:00,CameraTop 85,social0.1-aeon3,2023-11-25 22:00:00,23032909,2023-11-25 23:00:00,CameraTop 86,social0.1-aeon3,2023-11-25 23:00:00,23032909,2023-11-26 00:00:00,CameraTop 87,social0.1-aeon3,2023-11-26 00:00:00,23032909,2023-11-26 01:00:00,CameraTop 88,social0.1-aeon3,2023-11-26 01:00:00,23032909,2023-11-26 02:00:00,CameraTop 89,social0.1-aeon3,2023-11-26 02:00:00,23032909,2023-11-26 03:00:00,CameraTop 90,social0.1-aeon3,2023-11-26 03:00:00,23032909,2023-11-26 04:00:00,CameraTop 91,social0.1-aeon3,2023-11-26 04:00:00,23032909,2023-11-26 05:00:00,CameraTop 92,social0.1-aeon3,2023-11-26 05:00:00,23032909,2023-11-26 06:00:00,CameraTop 93,social0.1-aeon3,2023-11-26 06:00:00,23032909,2023-11-26 07:00:00,CameraTop 94,social0.1-aeon3,2023-11-26 07:00:00,23032909,2023-11-26 08:00:00,CameraTop 95,social0.1-aeon3,2023-11-26 08:00:00,23032909,2023-11-26 09:00:00,CameraTop 96,social0.1-aeon3,2023-11-26 09:00:00,23032909,2023-11-26 10:00:00,CameraTop 97,social0.1-aeon3,2023-11-26 10:00:00,23032909,2023-11-26 11:00:00,CameraTop 98,social0.1-aeon3,2023-11-26 11:00:00,23032909,2023-11-26 12:00:00,CameraTop 99,social0.1-aeon3,2023-11-26 12:00:00,23032909,2023-11-26 13:00:00,CameraTop

ttngu207 commented 3 months ago

After troubleshooting with @jkbhagatio this is due to the different patterns of SLEAP file for chunks before/after 2023-12-01