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SainsburyWellcomeCentre / masiv

MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data
MIT License
13 stars 5 forks source link

read down-sampled stack in parallel #6

Open raacampbell opened 7 years ago

raacampbell commented 7 years ago

Can be very slow to load over the network. Should be faster if we parfor the loading.

alexanderbrown commented 7 years ago

Problem is that it's a single file so i'm not sure it can be parallelised. I'll take a look.

Not sure why it should be particularly slow over the network though?

raacampbell commented 7 years ago

At least with imread on a multi-page TIFF I know it's possible to read the individual pages in parallel. It's already done with a for loop so simply making it parfor should be sufficient.

alexanderbrown commented 7 years ago

I'll give it a go

alexanderbrown commented 7 years ago

Just had a quick look. It may work for files read using the imread approach, but most files need to be read using a Tiff object which won't easily work in parallel. I'll try a couple of things to get it to work