Using pigz to speed up gzip steps causes flye to fail

SamStudio8 / reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

MIT License

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Using pigz to speed up gzip steps causes flye to fail #14

Open SamStudio8 opened 4 years ago

SamStudio8 commented 4 years ago

The call to gunzip -c in the flye 2.5 pipeline causes some trouble. I've just noticed in flye 2.6 this step is now done by the gzip module which might be more compatible.

SamStudio8 commented 4 years ago

This isn't really an issue. I've just done it three times and forgotten about it, so thought I would put it here.

SamStudio8 commented 4 years ago

owo wossis https://github.com/Piezoid/pugz