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SamStudio8 / reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
MIT License
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Is this for isolates or metagenomes? #30

Closed tseemann closed 4 years ago

tseemann commented 4 years ago

Is this for isolates or metagenomes?

Docs are a bit ambiguous.

SamStudio8 commented 4 years ago

We've used it for both, but I think the flye recipe might currently be hard coded to use --meta. I'll make this a configuration option and update the documentation to remove ambiguity.

On Thu, 13 Feb 2020, 03:29 Torsten Seemann, notifications@github.com wrote:

Is this for isolates or metagenomes?

Docs are a bit ambiguous.

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tseemann commented 4 years ago

Thanks Sam