Allow enforcing of a maximum number of attempts

SamStudio8 / reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

MIT License

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Allow enforcing of a maximum number of attempts #44

Open SamStudio8 opened 4 years ago

SamStudio8 commented 4 years ago

When using --restart-times, we may waste a lot of resources re-trying broken rules that we do not want to retry (eg. expensive assembly). I'd like to annotate rules with a permissible number of acceptable retries (and force reticulatus to abort otherwise).