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SamStudio8 / reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
MIT License
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Provide overview figure #50

Open Kirk3gaard opened 4 years ago

Kirk3gaard commented 4 years ago

Hi Sam I think it would be helpful if the "well stacked set of bioinformatics blocks" could be supported with an overview figure of what happens in the pipeline 😄 . e.g. image

The best figures are the ones you already have made for something else 😄

Best regards Rasmus

SamStudio8 commented 4 years ago

Great idea. My work on this was unfortunately brutally interrupted and so the documentation certainly needs some love.

On Mon, 27 Jul 2020, 13:59 Rasmus Kirkegaard, notifications@github.com wrote:

Hi Sam I think it would be helpful if the "well stacked set of bioinformatics blocks" could be supported with an overview figure of what happens in the pipeline 😄 . e.g. [image: image] https://user-images.githubusercontent.com/4373417/88544319-7e4da900-d019-11ea-93b8-cf463fa502bc.png

The best figures are the ones you already have made for something else 😄

Best regards Rasmus

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tanaes commented 3 years ago

Would be happy to make some contributions here, as I scale up my own use!

SamStudio8 commented 3 years ago

Hi folks! I feel terrible that I've not come back to this. I'm hoping that I'll be able to write reticulatus up formally over the Christmas holiday (if one can call it that), which will include some much needed TLC for the docs, features for snakemake upstream, and outstanding issues. @tanaes I'd be grateful for anything you'd think would be useful as a user!