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SamStudio8 / reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
MIT License
68 stars 5 forks source link

Is it possible to decorate the Snakemake logger to do some more useful stuff? #6

Closed SamStudio8 closed 4 years ago

SamStudio8 commented 4 years ago

maybe its time for a chitin-lite

SamStudio8 commented 4 years ago

For now, I've overridden the snakemake shell.py to make the pre and post command modifiers more useful. The fix was so trivial I've attempted to push it to snakemake proper: https://github.com/snakemake/snakemake/pull/138