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SamahElmahdi / Glaucoma-variant-calling

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[bam_sort_core] merging from 5 files and 1 in-memory blocks... while sorting the bam file #20

Open SamahElmahdi opened 4 years ago

SamahElmahdi commented 4 years ago

1.this link was helpfull, more than one saying that: That's not an error. It's a normal status message. https://www.reddit.com/r/bioinformatics/comments/bh66jj/bam_sort_core_merging_from_4_files_and_1_inmemory/

  1. while this link suppose that is a software error https://www.biostars.org/p/296002/
  2. i also have checked the manual http://www.htslib.org/doc/samtools-sort.html the first link is more recent than second , so i supposed that it was more trusted nevertheless i repeated it for the second time and the message was also shown.
marwaabdelazim commented 4 years ago

I have the same message while sorting the bam file ,actually i trust this link more as It's a normal status message https://www.reddit.com/r/bioinformatics/comments/bh66jj/bam_sort_core_merging_from_4_files_and_1_inmemory/