SantosRAC / conekt_grasses_microbiome

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Add classification method cannot find GG record by taxon path #25

Open SantosRAC opened 1 month ago

SantosRAC commented 1 month ago

In the otu_classification model, the following function fails to find the taxonomic path using the filter_by function, even though path are the same in uploaded files (source of GG taxonomic information and the file with associations between OTU names and their taxon GG paths);

This query returns None in GGTaxon.query.filter_by(taxon_path=path).first().

Report associated with commit 04cc61111cc1b72e14968f41334d9f95270e1cc4

Currently, the function is associating all OTUs with a single GG record (pk 1).